IL_4V88_415
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V88|1|A6|A|579, 4V88|1|A6|U|581, 4V88|1|A6|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A6|G|562
4V88|1|A6|U|563
4V88|1|A6|G|564
4V88|1|A6|C|565
4V88|1|A6|C|566
4V88|1|A6|A|567
4V88|1|A6|G|568
*
4V88|1|A6|C|575
4V88|1|A6|G|576
4V88|1|A6|G|577
4V88|1|A6|U|578
4V88|1|A6|A|579
4V88|1|A6|A|580
4V88|1|A6|U|581
4V88|1|A6|U|582
4V88|1|A6|C|583
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CD
- 40S ribosomal protein S3
- Chain CX
- 40S ribosomal protein S23-A
- Chain Ce
- 40S ribosomal protein S30-A
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