#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-52-126-96-127-8
1 IL_8C3A_4258C3A0.39503Kink-turn relatedCM SSU rRNAG560U561G562C563C564A565G566*C573G574G575U576A578C581cWWntHScWW
2 IL_4V88_4154V880.21003Kink-turn relatedA6 SSU rRNAG562U563G564C565C566A567G568*C575G576G577U578A580C583cWWcSWtWHtHScWW
3 IL_5J7L_0255J7L0.13703Kink-turn relatedAA SSU rRNAG515PSU516G517C518C519A520G521*C528G529G530U531A533C536cWWcSWtWHtHSntWWcWW
4 IL_4LFB_0214LFB0.00003Kink-turn relatedA SSU rRNAG515PSU516G517C518C519A520G521*C528G529G530U531A533C536cWWcSWtWHtHSntWWcWW
5 IL_6CZR_1336CZR0.20323Kink-turn related1a SSU rRNAG499PSU500G501C502C503A504G505*C512G513G514U515A517C520cWWntWHntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGCCAG*CGGUAAUAC3
GUGCCAG*CGGUAAUUC2
Non-Watson-Crick part of the motif
SequenceCounts
(PSU)GCCA*GGUAAUA3
UGCCA*GGUAAUU2

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn related (5)
  • Basepair signature
    cWW-cSW-tWH-L-R-L-R-tHS-cWW
    Heat map statistics
    Min 0.14 | Avg 0.22 | Max 0.40
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4482 s