IL_4V88_416

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

4V88|1|A6|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|G|616
4V88|1|A6|U|617
4V88|1|A6|U|618
4V88|1|A6|A|619
4V88|1|A6|A|620
4V88|1|A6|A|621
4V88|1|A6|A|622
*
4V88|1|A6|U|1104
4V88|1|A6|C|1105

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CX

40S ribosomal protein S23-A

Chain Ca

40S ribosomal protein S26-A