Motif IL_38186.3 Version IL_38186.3 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_134 | 6CZR | 0.1214 | 1 | 1a | SSU rRNA | C | 553 | G | 554 | U | 555 | A | 557 | A | 558 | G | 559 | * | C | 858 | G | 859 | cWW | cWW |
| 2 | IL_4LFB_022 | 4LFB | 0.0000 | 1 | A | SSU rRNA | C | 569 | G | 570 | U | 571 | A | 573 | A | 574 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
| 3 | IL_5J7L_026 | 5J7L | 0.0691 | 1 | AA | SSU rRNA | C | 569 | G | 570 | U | 571 | A | 573 | A | 574 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
| 4 | IL_4V88_416 | 4V88 | 0.1289 | 1 | A6 | SSU rRNA | G | 616 | U | 617 | U | 618 | A | 620 | A | 621 | A | 622 | * | U | 1104 | C | 1105 | cWW | cWW |
| 5 | IL_8C3A_426 | 8C3A | 0.1474 | 1 | CM | SSU rRNA | G | 614 | U | 615 | U | 616 | A | 618 | A | 619 | A | 620 | * | U | 1089 | C | 1090 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAAG*CG | 3 |
| GUUAAAA*UC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAA* | 3 |
| UUAAA* | 2 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWW-R-L-R
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.20
Coloring options: