IL_4V88_418

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A6|C|627
4V88|1|A6|G|628
4V88|1|A6|U|629
4V88|1|A6|A|630
4V88|1|A6|G|631
*
4V88|1|A6|U|968
4V88|1|A6|C|969
4V88|1|A6|A|970
4V88|1|A6|A|971
4V88|1|A6|G|972

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CL

40S ribosomal protein S11-A

Chain CN

40S ribosomal protein S13

Chain CW

40S ribosomal protein S22-A

Chain CX

40S ribosomal protein S23-A