IL_4V88_430

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V88|1|A6|G|871
4V88|1|A6|G|872
4V88|1|A6|U|873
4V88|1|A6|C|874
*
4V88|1|A6|G|953
4V88|1|A6|G|954
4V88|1|A6|A|955
4V88|1|A6|C|956

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CB

40S ribosomal protein S1-A

Chain CN

40S ribosomal protein S13

Chain Cb

40S ribosomal protein S27-A