IL_4V88_431

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

4V88|1|A6|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V88|1|A6|C|874
4V88|1|A6|G|875
4V88|1|A6|G|876
4V88|1|A6|G|877
4V88|1|A6|G|878
*
4V88|1|A6|C|950
4V88|1|A6|A|951
4V88|1|A6|A|952
4V88|1|A6|G|953

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CB

40S ribosomal protein S1-A

Chain CN

40S ribosomal protein S13

Chain Ca

40S ribosomal protein S26-A

Chain Dc

60S ribosomal protein L30