IL_4V88_432

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V88|1|A6|G|885
4V88|1|A6|U|886
4V88|1|A6|A|887
4V88|1|A6|U|888
*
4V88|1|A6|A|924
4V88|1|A6|G|925
4V88|1|A6|A|926
4V88|1|A6|C|927

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CB

40S ribosomal protein S1-A

Chain CO

40S ribosomal protein S14-A

Chain Ca

40S ribosomal protein S26-A

Chain DA

60S ribosomal protein L2-A

Chain Dp

60S ribosomal protein L43-A