IL_4V88_436

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A6|C|990
4V88|1|A6|G|991
4V88|1|A6|A|992
4V88|1|A6|A|993
4V88|1|A6|G|994
*
4V88|1|A6|C|1010
4V88|1|A6|G|1011
4V88|1|A6|U|1012
4V88|1|A6|A|1013
4V88|1|A6|G|1014

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CO

40S ribosomal protein S14-A

Chain Ca

40S ribosomal protein S26-A

Chain DA

60S ribosomal protein L2-A