IL_4V88_443

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

4V88|1|A6|C|1158, 4V88|1|A6|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

4V88|1|A6|A|1157
4V88|1|A6|C|1158
4V88|1|A6|C|1159
4V88|1|A6|A|1160
*
4V88|1|A6|U|1617
4V88|1|A6|C|1618
4V88|1|A6|C|1619
4V88|1|A6|C|1620
4V88|1|A6|U|1621

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CF

40S ribosomal protein S5

Chain CQ

40S ribosomal protein S16-A

Chain Cc

40S ribosomal protein S28-A