RNA 3D Hub //

Motif IL_63596.9 Version IL_63596.9 of this group appears in releases 3.89 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-72-42-63-74-75-6
1 IL_6XJQ_0016XJQ0.18941C-loopASelf-alkylating ribozyme (58-MER)G5C6U7C8C9*G52C54ncSHcWWcSHtWHncWScWW
2 IL_4JRC_0034JRC0.18011C-loopBDistal Stem I region of the glyQS T box leader RNAC29C30U31C32U33*A73G75cWWcSHtWHtHScWScWW
3 IL_5B2P_0035B2P0.13011C-loopBGuide RNAC76C77U78C79U80*A88G90cWWcSHtWHtHScWScWW
4 IL_8VTW_1038VTW0.00001C-loop1A LSU rRNAC2680C2681U2682C2683U2684*A2725G2727cWWcSHtWHtHScWScWW
5 IL_5J7L_3475J7L0.10861C-loopDA LSU rRNAU2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
6 IL_4WF9_1014WF90.11711C-loopX LSU rRNAC2707C2708U2709C2710U2711*A2752G2754cWWncSHtWHntHScWScWW
7 IL_7A0S_0957A0S0.14821C-loopX LSU rRNAC2659C2660G2661C2662U2663*A2705G2707cWWncSHtWHcWScWW
8 IL_4V9F_0934V9F0.14261C-loop0 LSU rRNAC2717C2718A2719C2720U2721*A2761G2763cWWcSHtWHcWScWW
9 IL_4V9F_0514V9F0.15301C-loop0 LSU rRNAG1425C1426A1427C1428U1429*A1437C1439cWWcSHtWHcWScWW
10 IL_8HNT_0028HNT0.12031C-loopBsgRNAG87C88U89C90U91*A120C122ncSHcWWncSHtWHcWScWW
11 IL_6JDV_0046JDV0.19641C-loopBCRISPR RNA direct repeat elementG105C106U107C108U109*A138C140ncSHcWWtWHcWScWW
12 IL_4V88_4434V880.16412C-loopA6 SSU rRNAU1617C1618C1619C1620U1621*A1157A1160ncSHcWWncSHtWHcWScWW
13 IL_8C3A_4498C3A0.20452C-loopCM SSU rRNAU1604C1605C1606C1607U1608*A1142A1145cSHcWWncSHtWHcWScWW
14 IL_1KOG_0071KOG0.17751C-loopOThreonyl-tRNA synthetase mRNAC96C97A98C99U100*A74G76ncSHcWWcSHtWHcWScWW
15 IL_4MGN_0014MGN0.19761C-loopAglyQS T box riboswitchC29C30U31C32U33*A73G75cWWncSHntWHntHScWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUCU*ACG3
CCUCU*AUG2
GCUCU*AUC2
UCCCU*ACCA2
GCUCC*GUC1
UCACU*AAA1
CCGCU*AUG1
CCACU*ACG1
GCACU*AGC1
CCACU*AUG1
Non-Watson-Crick part of the motif
SequenceCounts
CUC*U5
CUC*C3
CCC*CC2
CAC*A1
CGC*U1
CAC*C1
CAC*G1
CAC*U1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • C-loop (15)
    • Basepair signature
    cWW-cWS-cHS-L-cWW-tWH
    Heat map statistics
    Min 0.11 | Avg 0.20 | Max 0.57
    Help

    Coloring options:

    IL_6XJQ_001:IL_6XJQ_001 = 0IL_6XJQ_001:IL_4JRC_003 = 0.2931IL_6XJQ_001:IL_5B2P_003 = 0.3309IL_6XJQ_001:IL_8VTW_103 = 0.1894IL_6XJQ_001:IL_5J7L_347 = 0.1634IL_6XJQ_001:IL_4WF9_101 = 0.1862IL_6XJQ_001:IL_7A0S_095 = 0.2152IL_6XJQ_001:IL_4V9F_093 = 0.2431IL_6XJQ_001:IL_4V9F_051 = 0.5316IL_6XJQ_001:IL_8HNT_002 = 0.4099IL_6XJQ_001:IL_6JDV_004 = 0.4255IL_6XJQ_001:IL_4V88_443 = 0.539IL_6XJQ_001:IL_8C3A_449 = 0.5747IL_6XJQ_001:IL_1KOG_007 = 0.4646IL_6XJQ_001:IL_4MGN_001 = 0.3629IL_4JRC_003:IL_6XJQ_001 = 0.2931IL_4JRC_003:IL_4JRC_003 = 0IL_4JRC_003:IL_5B2P_003 = 0.1879IL_4JRC_003:IL_8VTW_103 = 0.1801IL_4JRC_003:IL_5J7L_347 = 0.1919IL_4JRC_003:IL_4WF9_101 = 0.1647IL_4JRC_003:IL_7A0S_095 = 0.2175IL_4JRC_003:IL_4V9F_093 = 0.2199IL_4JRC_003:IL_4V9F_051 = 0.2523IL_4JRC_003:IL_8HNT_002 = 0.2258IL_4JRC_003:IL_6JDV_004 = 0.2358IL_4JRC_003:IL_4V88_443 = 0.2433IL_4JRC_003:IL_8C3A_449 = 0.2721IL_4JRC_003:IL_1KOG_007 = 0.2478IL_4JRC_003:IL_4MGN_001 = 0.2149IL_5B2P_003:IL_6XJQ_001 = 0.3309IL_5B2P_003:IL_4JRC_003 = 0.1879IL_5B2P_003:IL_5B2P_003 = 0IL_5B2P_003:IL_8VTW_103 = 0.1301IL_5B2P_003:IL_5J7L_347 = 0.1895IL_5B2P_003:IL_4WF9_101 = 0.2032IL_5B2P_003:IL_7A0S_095 = 0.2251IL_5B2P_003:IL_4V9F_093 = 0.2083IL_5B2P_003:IL_4V9F_051 = 0.209IL_5B2P_003:IL_8HNT_002 = 0.1718IL_5B2P_003:IL_6JDV_004 = 0.2153IL_5B2P_003:IL_4V88_443 = 0.2136IL_5B2P_003:IL_8C3A_449 = 0.2531IL_5B2P_003:IL_1KOG_007 = 0.2407IL_5B2P_003:IL_4MGN_001 = 0.2751IL_8VTW_103:IL_6XJQ_001 = 0.1894IL_8VTW_103:IL_4JRC_003 = 0.1801IL_8VTW_103:IL_5B2P_003 = 0.1301IL_8VTW_103:IL_8VTW_103 = 0IL_8VTW_103:IL_5J7L_347 = 0.1086IL_8VTW_103:IL_4WF9_101 = 0.1171IL_8VTW_103:IL_7A0S_095 = 0.1482IL_8VTW_103:IL_4V9F_093 = 0.1426IL_8VTW_103:IL_4V9F_051 = 0.153IL_8VTW_103:IL_8HNT_002 = 0.1203IL_8VTW_103:IL_6JDV_004 = 0.1964IL_8VTW_103:IL_4V88_443 = 0.1641IL_8VTW_103:IL_8C3A_449 = 0.2045IL_8VTW_103:IL_1KOG_007 = 0.1775IL_8VTW_103:IL_4MGN_001 = 0.1976IL_5J7L_347:IL_6XJQ_001 = 0.1634IL_5J7L_347:IL_4JRC_003 = 0.1919IL_5J7L_347:IL_5B2P_003 = 0.1895IL_5J7L_347:IL_8VTW_103 = 0.1086IL_5J7L_347:IL_5J7L_347 = 0IL_5J7L_347:IL_4WF9_101 = 0.1132IL_5J7L_347:IL_7A0S_095 = 0.1091IL_5J7L_347:IL_4V9F_093 = 0.1749IL_5J7L_347:IL_4V9F_051 = 0.186IL_5J7L_347:IL_8HNT_002 = 0.1386IL_5J7L_347:IL_6JDV_004 = 0.2168IL_5J7L_347:IL_4V88_443 = 0.1506IL_5J7L_347:IL_8C3A_449 = 0.1867IL_5J7L_347:IL_1KOG_007 = 0.1286IL_5J7L_347:IL_4MGN_001 = 0.1769IL_4WF9_101:IL_6XJQ_001 = 0.1862IL_4WF9_101:IL_4JRC_003 = 0.1647IL_4WF9_101:IL_5B2P_003 = 0.2032IL_4WF9_101:IL_8VTW_103 = 0.1171IL_4WF9_101:IL_5J7L_347 = 0.1132IL_4WF9_101:IL_4WF9_101 = 0IL_4WF9_101:IL_7A0S_095 = 0.1223IL_4WF9_101:IL_4V9F_093 = 0.1274IL_4WF9_101:IL_4V9F_051 = 0.1795IL_4WF9_101:IL_8HNT_002 = 0.1765IL_4WF9_101:IL_6JDV_004 = 0.2292IL_4WF9_101:IL_4V88_443 = 0.1957IL_4WF9_101:IL_8C3A_449 = 0.2373IL_4WF9_101:IL_1KOG_007 = 0.1862IL_4WF9_101:IL_4MGN_001 = 0.1668IL_7A0S_095:IL_6XJQ_001 = 0.2152IL_7A0S_095:IL_4JRC_003 = 0.2175IL_7A0S_095:IL_5B2P_003 = 0.2251IL_7A0S_095:IL_8VTW_103 = 0.1482IL_7A0S_095:IL_5J7L_347 = 0.1091IL_7A0S_095:IL_4WF9_101 = 0.1223IL_7A0S_095:IL_7A0S_095 = 0IL_7A0S_095:IL_4V9F_093 = 0.1644IL_7A0S_095:IL_4V9F_051 = 0.1887IL_7A0S_095:IL_8HNT_002 = 0.1671IL_7A0S_095:IL_6JDV_004 = 0.2401IL_7A0S_095:IL_4V88_443 = 0.181IL_7A0S_095:IL_8C3A_449 = 0.2223IL_7A0S_095:IL_1KOG_007 = 0.1882IL_7A0S_095:IL_4MGN_001 = 0.2033IL_4V9F_093:IL_6XJQ_001 = 0.2431IL_4V9F_093:IL_4JRC_003 = 0.2199IL_4V9F_093:IL_5B2P_003 = 0.2083IL_4V9F_093:IL_8VTW_103 = 0.1426IL_4V9F_093:IL_5J7L_347 = 0.1749IL_4V9F_093:IL_4WF9_101 = 0.1274IL_4V9F_093:IL_7A0S_095 = 0.1644IL_4V9F_093:IL_4V9F_093 = 0IL_4V9F_093:IL_4V9F_051 = 0.1314IL_4V9F_093:IL_8HNT_002 = 0.2088IL_4V9F_093:IL_6JDV_004 = 0.2575IL_4V9F_093:IL_4V88_443 = 0.2541IL_4V9F_093:IL_8C3A_449 = 0.2954IL_4V9F_093:IL_1KOG_007 = 0.2328IL_4V9F_093:IL_4MGN_001 = 0.2414IL_4V9F_051:IL_6XJQ_001 = 0.5316IL_4V9F_051:IL_4JRC_003 = 0.2523IL_4V9F_051:IL_5B2P_003 = 0.209IL_4V9F_051:IL_8VTW_103 = 0.153IL_4V9F_051:IL_5J7L_347 = 0.186IL_4V9F_051:IL_4WF9_101 = 0.1795IL_4V9F_051:IL_7A0S_095 = 0.1887IL_4V9F_051:IL_4V9F_093 = 0.1314IL_4V9F_051:IL_4V9F_051 = 0IL_4V9F_051:IL_8HNT_002 = 0.1569IL_4V9F_051:IL_6JDV_004 = 0.2181IL_4V9F_051:IL_4V88_443 = 0.248IL_4V9F_051:IL_8C3A_449 = 0.2786IL_4V9F_051:IL_1KOG_007 = 0.2302IL_4V9F_051:IL_4MGN_001 = 0.277IL_8HNT_002:IL_6XJQ_001 = 0.4099IL_8HNT_002:IL_4JRC_003 = 0.2258IL_8HNT_002:IL_5B2P_003 = 0.1718IL_8HNT_002:IL_8VTW_103 = 0.1203IL_8HNT_002:IL_5J7L_347 = 0.1386IL_8HNT_002:IL_4WF9_101 = 0.1765IL_8HNT_002:IL_7A0S_095 = 0.1671IL_8HNT_002:IL_4V9F_093 = 0.2088IL_8HNT_002:IL_4V9F_051 = 0.1569IL_8HNT_002:IL_8HNT_002 = 0IL_8HNT_002:IL_6JDV_004 = 0.1473IL_8HNT_002:IL_4V88_443 = 0.1386IL_8HNT_002:IL_8C3A_449 = 0.1673IL_8HNT_002:IL_1KOG_007 = 0.1691IL_8HNT_002:IL_4MGN_001 = 0.2361IL_6JDV_004:IL_6XJQ_001 = 0.4255IL_6JDV_004:IL_4JRC_003 = 0.2358IL_6JDV_004:IL_5B2P_003 = 0.2153IL_6JDV_004:IL_8VTW_103 = 0.1964IL_6JDV_004:IL_5J7L_347 = 0.2168IL_6JDV_004:IL_4WF9_101 = 0.2292IL_6JDV_004:IL_7A0S_095 = 0.2401IL_6JDV_004:IL_4V9F_093 = 0.2575IL_6JDV_004:IL_4V9F_051 = 0.2181IL_6JDV_004:IL_8HNT_002 = 0.1473IL_6JDV_004:IL_6JDV_004 = 0IL_6JDV_004:IL_4V88_443 = 0.1649IL_6JDV_004:IL_8C3A_449 = 0.2023IL_6JDV_004:IL_1KOG_007 = 0.2096IL_6JDV_004:IL_4MGN_001 = 0.3059IL_4V88_443:IL_6XJQ_001 = 0.539IL_4V88_443:IL_4JRC_003 = 0.2433IL_4V88_443:IL_5B2P_003 = 0.2136IL_4V88_443:IL_8VTW_103 = 0.1641IL_4V88_443:IL_5J7L_347 = 0.1506IL_4V88_443:IL_4WF9_101 = 0.1957IL_4V88_443:IL_7A0S_095 = 0.181IL_4V88_443:IL_4V9F_093 = 0.2541IL_4V88_443:IL_4V9F_051 = 0.248IL_4V88_443:IL_8HNT_002 = 0.1386IL_4V88_443:IL_6JDV_004 = 0.1649IL_4V88_443:IL_4V88_443 = 0IL_4V88_443:IL_8C3A_449 = 0.1255IL_4V88_443:IL_1KOG_007 = 0.1586IL_4V88_443:IL_4MGN_001 = 0.2372IL_8C3A_449:IL_6XJQ_001 = 0.5747IL_8C3A_449:IL_4JRC_003 = 0.2721IL_8C3A_449:IL_5B2P_003 = 0.2531IL_8C3A_449:IL_8VTW_103 = 0.2045IL_8C3A_449:IL_5J7L_347 = 0.1867IL_8C3A_449:IL_4WF9_101 = 0.2373IL_8C3A_449:IL_7A0S_095 = 0.2223IL_8C3A_449:IL_4V9F_093 = 0.2954IL_8C3A_449:IL_4V9F_051 = 0.2786IL_8C3A_449:IL_8HNT_002 = 0.1673IL_8C3A_449:IL_6JDV_004 = 0.2023IL_8C3A_449:IL_4V88_443 = 0.1255IL_8C3A_449:IL_8C3A_449 = 0IL_8C3A_449:IL_1KOG_007 = 0.1344IL_8C3A_449:IL_4MGN_001 = 0.2528IL_1KOG_007:IL_6XJQ_001 = 0.4646IL_1KOG_007:IL_4JRC_003 = 0.2478IL_1KOG_007:IL_5B2P_003 = 0.2407IL_1KOG_007:IL_8VTW_103 = 0.1775IL_1KOG_007:IL_5J7L_347 = 0.1286IL_1KOG_007:IL_4WF9_101 = 0.1862IL_1KOG_007:IL_7A0S_095 = 0.1882IL_1KOG_007:IL_4V9F_093 = 0.2328IL_1KOG_007:IL_4V9F_051 = 0.2302IL_1KOG_007:IL_8HNT_002 = 0.1691IL_1KOG_007:IL_6JDV_004 = 0.2096IL_1KOG_007:IL_4V88_443 = 0.1586IL_1KOG_007:IL_8C3A_449 = 0.1344IL_1KOG_007:IL_1KOG_007 = 0IL_1KOG_007:IL_4MGN_001 = 0.2367IL_4MGN_001:IL_6XJQ_001 = 0.3629IL_4MGN_001:IL_4JRC_003 = 0.2149IL_4MGN_001:IL_5B2P_003 = 0.2751IL_4MGN_001:IL_8VTW_103 = 0.1976IL_4MGN_001:IL_5J7L_347 = 0.1769IL_4MGN_001:IL_4WF9_101 = 0.1668IL_4MGN_001:IL_7A0S_095 = 0.2033IL_4MGN_001:IL_4V9F_093 = 0.2414IL_4MGN_001:IL_4V9F_051 = 0.277IL_4MGN_001:IL_8HNT_002 = 0.2361IL_4MGN_001:IL_6JDV_004 = 0.3059IL_4MGN_001:IL_4V88_443 = 0.2372IL_4MGN_001:IL_8C3A_449 = 0.2528IL_4MGN_001:IL_1KOG_007 = 0.2367IL_4MGN_001:IL_4MGN_001 = 0IL_6XJQ_001IL_4JRC_003IL_5B2P_003IL_8VTW_103IL_5J7L_347IL_4WF9_101IL_7A0S_095IL_4V9F_093IL_4V9F_051IL_8HNT_002IL_6JDV_004IL_4V88_443IL_8C3A_449IL_1KOG_007IL_4MGN_001Discrepancy0.000.100.200.300.400.50
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