IL_4V88_451

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

4V88|1|A6|U|1432, 4V88|1|A6|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|U|1276
4V88|1|A6|G|1277
4V88|1|A6|G|1278
*
4V88|1|A6|U|1430
4V88|1|A6|C|1431
4V88|1|A6|U|1432
4V88|1|A6|G|1433
4V88|1|A6|U|1434
4V88|1|A6|G|1435
4V88|1|A6|A|1436

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CD

40S ribosomal protein S3

Chain CK

40S ribosomal protein S10-A

Chain CU

40S ribosomal protein S20

Chain Cd

40S ribosomal protein S29-A

Chain Cf

40S ribosomal protein S31