#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-73-84-75-6
1 IL_1XJR_0011XJR0.45140Isolated basepair with bulged basesAs2m RNAC9C10G11A12G13*C39A40G41cWWcWW
2 IL_4LFB_0644LFB0.37431A SSU rRNAC1440G1441G1442A1446G1447*C1459A1460G1461cWWtSHcWW
3 IL_6CZR_1726CZR0.00001Isolated basepair with bulged bases1a SSU rRNAC1423G1424G1425A1427G1428*C1437A1438G1439cWWtSHcWW
4 IL_5UNE_0025UNE0.36011Isolated basepair with bulged basesB+ARNA (47-MER)C33G34G35A37A38*U10G11G12cWWntSHcWW
5 IL_4V88_4514V880.79982Minor groove platform with extra cWWA6 SSU rRNAU1430C1431G1433U1434A1436*U1276G1277G1278cWWtHSncWWacWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGGAG*CAG2
CCGAG*CAG1
CGGAAA*UGG1
UCUGUGA*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
GGGA*A2
CGA*A1
GGAA*G1
CUGUG*G1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated basepair with bulged bases (3)
  • (1)
  • Minor groove platform with extra cWW (1)
  • Basepair signature
    cWW-tSH-L-cWW-L
    Heat map statistics
    Min 0.36 | Avg 0.47 | Max 0.89
    Help

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