IL_4V88_466

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Non canonical cWW and near pair

Broad Annotation

Non canonical cWW and near pair

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|C|1644
4V88|1|A6|G|1645
4V88|1|A6|C|1646
4V88|1|A6|U|1647
*
4V88|1|A6|A|1753
4V88|1|A6|A|1754
4V88|1|A6|A|1755
4V88|1|A6|A|1756||A
4V88|1|A6|G|1757

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CX

40S ribosomal protein S23-A

Chain Ce

40S ribosomal protein S30-A

Chain Dn

60S ribosomal protein L41-A