IL_4V88_477
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CU*AAG
- Length
- 5 nucleotides
- Bulged bases
- 4V88|1|A7|A|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_477 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.0633
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4V88|1|A7|C|15
4V88|1|A7|U|16
*
4V88|1|A7|A|63
4V88|1|A7|A|64
4V88|1|A7|G|65
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain DD
- 60S ribosomal protein L5
- Chain DI
- 60S ribosomal protein L10
- Chain DJ
- 60S ribosomal protein L11-A
Coloring options: