IL_4V88_486

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

4V88|1|A8|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57598.1

Basepair signature

cWW-cWW

Number of instances in this motif group

400

Unit IDs

4V88|1|A8|G|68
4V88|1|A8|U|69
*
4V88|1|A8|A|89
4V88|1|A8|U|90
4V88|1|A8|C|91

Current chains

Chain A8

5.8S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain DY

60S ribosomal protein L26-A

Chain Dh

60S ribosomal protein L35-A

Chain Dj

60S ribosomal protein L37-A

Chain Dl

60S ribosomal protein L39