IL_4V88_488

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

4V88|1|A1|U|1820, 4V88|1|A1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_488 not in the Motif Atlas

Geometric match to IL_8C3A_151

Geometric discrepancy: 0.3091

The information below is about IL_8C3A_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V88|1|A1|G|1623
4V88|1|A1|G|1624
4V88|1|A1|A|1625
*
4V88|1|A1|U|1818
4V88|1|A1|U|1819
4V88|1|A1|U|1820
4V88|1|A1|U|1821
4V88|1|A1|C|1822

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34-A