IL_4V88_490

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGG*CGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_490 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3891

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A1|U|1950
4V88|1|A1|C|1951
4V88|1|A1|G|1952
4V88|1|A1|G|1953
*
4V88|1|A1|C|2094
4V88|1|A1|G|2095
4V88|1|A1|A|2096

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A