IL_4V88_505
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU
- Length
- 34 nucleotides
- Bulged bases
- 4V88|1|A6|U|232, 4V88|1|A6|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13244.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A6|A|213
4V88|1|A6|G|214
4V88|1|A6|A|215
4V88|1|A6|U|216
4V88|1|A6|A|217
4V88|1|A6|A|218
4V88|1|A6|A|219
4V88|1|A6|A|220
4V88|1|A6|A|221
4V88|1|A6|A|222
4V88|1|A6|U|223
4V88|1|A6|C|224
4V88|1|A6|A|225
4V88|1|A6|A|226
4V88|1|A6|U|227
4V88|1|A6|G|228
4V88|1|A6|U|229
4V88|1|A6|C|230
4V88|1|A6|U|231
4V88|1|A6|U|232
4V88|1|A6|C|233
4V88|1|A6|G|234
4V88|1|A6|G|235
4V88|1|A6|A|236
4V88|1|A6|C|237
4V88|1|A6|U|238
4V88|1|A6|C|239
4V88|1|A6|U|240
4V88|1|A6|U|241
4V88|1|A6|U|242
4V88|1|A6|G|243
*
4V88|1|A6|C|250
4V88|1|A6|A|251
4V88|1|A6|U|252
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CE
- 40S ribosomal protein S4-A
- Chain CG
- 40S ribosomal protein S6-A
- Chain CI
- 40S ribosomal protein S8-A
- Chain CL
- 40S ribosomal protein S11-A
Coloring options: