Motif IL_13244.1 Version IL_13244.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | break | 30 | 31 | 32 | 1-32 | 2-31 | 16-23 | 18-22 | 29-30 | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_505 | 4V88 | 0.0000 | 2 | A6 | SSU rRNA | A | 213 | G | 214 | A | 215 | U | 216 | A | 217 | A | 218 | A | 219 | A | 220 | A | 221 | A | 222 | U | 223 | C | 224 | A | 225 | A | 226 | U | 227 | G | 228 | U | 229 | C | 230 | U | 231 | C | 233 | G | 234 | G | 235 | A | 236 | C | 237 | U | 238 | C | 239 | U | 241 | U | 242 | G | 243 | * | C | 250 | A | 251 | U | 252 | cWW | tSH | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAAAAUCAAUGUCUUCGGACUCUUU*A | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: