IL_4V88_512

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

4V88|1|A1|U|1820, 4V88|1|A1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_512 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2818

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V88|1|A1|G|1623
4V88|1|A1|G|1624
*
4V88|1|A1|U|1819
4V88|1|A1|U|1820
4V88|1|A1|U|1821
4V88|1|A1|C|1822

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34-A