IL_8P9A_293

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8P9A|1|AR|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8P9A|1|AR|G|1623
8P9A|1|AR|G|1624
*
8P9A|1|AR|U|1819
8P9A|1|AR|U|1820
8P9A|1|AR|U|1821
8P9A|1|AR|C|1822

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L34-A

Chain DM

60S ribosomal protein L38