IL_4V89_008

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

4V89|1|AA|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_008 not in the Motif Atlas

Geometric match to IL_1U9S_006

Geometric discrepancy: 0.3189

The information below is about IL_1U9S_006

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V89|1|AA|G|75
4V89|1|AA|G|76
*
4V89|1|AA|U|93
4V89|1|AA|G|94
4V89|1|AA|C|95

Current chains

Chain AA

16S rRNA

Nearby chains