IL_4V89_014

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V89|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_014 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V89|1|AA|G|147
4V89|1|AA|G|148
4V89|1|AA|A|149
4V89|1|AA|U|150
4V89|1|AA|A|151
4V89|1|AA|A|152
4V89|1|AA|C|153
*
4V89|1|AA|G|168
4V89|1|AA|C|169
4V89|1|AA|U|170
4V89|1|AA|A|171
4V89|1|AA|A|172
4V89|1|AA|U|173
4V89|1|AA|A|174
4V89|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20