IL_4V89_017

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V89|1|AA|U|244, 4V89|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_017 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0893

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V89|1|AA|G|242
4V89|1|AA|A|243
4V89|1|AA|U|244
4V89|1|AA|U|245
4V89|1|AA|A|246
4V89|1|AA|G|247
*
4V89|1|AA|C|277
4V89|1|AA|G|278
4V89|1|AA|A|279
4V89|1|AA|C|280
4V89|1|AA|G|281
4V89|1|AA|A|282
4V89|1|AA|U|283
4V89|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17