IL_4V89_026

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_026 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1706

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V89|1|AA|G|450
4V89|1|AA|A|451
4V89|1|AA|A|452
4V89|1|AA|G|453
4V89|1|AA|G|454
4V89|1|AA|G|455
*
4V89|1|AA|C|477
4V89|1|AA|A|478
4V89|1|AA|U|479
4V89|1|AA|U|480
4V89|1|AA|G|481
4V89|1|AA|A|482
4V89|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AW

Peptide chain release factor 3