IL_4V89_027

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAAAG*CUUUG

Length

10 nucleotides

Bulged bases

4V89|1|AA|A|461

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_027 not in the Motif Atlas

Geometric match to IL_8C3A_102

Geometric discrepancy: 0.3943

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V89|1|AA|U|458
4V89|1|AA|A|459
4V89|1|AA|A|460
4V89|1|AA|A|461
4V89|1|AA|G|462
*
4V89|1|AA|C|470
4V89|1|AA|U|471
4V89|1|AA|U|472
4V89|1|AA|U|473
4V89|1|AA|G|474

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16