IL_4V89_037

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4V89|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_037 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V89|1|AA|U|662
4V89|1|AA|A|663
4V89|1|AA|G|664
4V89|1|AA|A|665
4V89|1|AA|G|666
*
4V89|1|AA|U|740
4V89|1|AA|G|741
4V89|1|AA|G|742
4V89|1|AA|A|743

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18