IL_4V89_042

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4V89|1|AA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_042 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2892

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V89|1|AA|U|921
4V89|1|AA|G|922
4V89|1|AA|A|923
*
4V89|1|AA|U|1393
4V89|1|AA|A|1394
4V89|1|AA|C|1395
4V89|1|AA|A|1396

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S5