IL_4V89_077

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_077 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0859

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V89|1|BA|C|239
4V89|1|BA|C|240
4V89|1|BA|A|241
4V89|1|BA|G|242
4V89|1|BA|U|243
4V89|1|BA|A|244
4V89|1|BA|G|245
*
4V89|1|BA|C|253
4V89|1|BA|G|254
4V89|1|BA|A|255
4V89|1|BA|A|256
4V89|1|BA|C|257
4V89|1|BA|G|258

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15