3D structure

PDB id
4V89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V89_084 not in the Motif Atlas
Homologous match to IL_5J7L_258
Geometric discrepancy: 0.0696
The information below is about IL_5J7L_258
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V89|1|BA|U|606
4V89|1|BA|U|607
4V89|1|BA|A|608
4V89|1|BA|A|609
4V89|1|BA|C|610
*
4V89|1|BA|G|618
4V89|1|BA|G|619
4V89|1|BA|G|620
4V89|1|BA|A|621
4V89|1|BA|G|622

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BP
50S ribosomal protein L15

Coloring options:


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