IL_4V89_091

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V89|1|BA|G|776, 4V89|1|BA|A|788, 4V89|1|BA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_091 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V89|1|BA|G|775
4V89|1|BA|G|776
4V89|1|BA|G|777
*
4V89|1|BA|C|787
4V89|1|BA|A|788
4V89|1|BA|A|789
4V89|1|BA|U|790
4V89|1|BA|C|791

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BW

50S ribosomal protein L22