IL_4V89_117

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_117 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.088

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V89|1|BA|C|1351
4V89|1|BA|U|1352
4V89|1|BA|A|1353
4V89|1|BA|A|1354
4V89|1|BA|G|1355
*
4V89|1|BA|C|1376
4V89|1|BA|G|1377
4V89|1|BA|A|1378
4V89|1|BA|U|1379
4V89|1|BA|G|1380

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2