IL_4V89_122

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

4V89|1|BA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_122 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0688

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V89|1|BA|C|1437
4V89|1|BA|U|1438
4V89|1|BA|A|1439
4V89|1|BA|U|1440
*
4V89|1|BA|A|1551
4V89|1|BA|A|1552
4V89|1|BA|A|1553
4V89|1|BA|U|1554
4V89|1|BA|G|1555

Current chains

Chain BA

23S rRNA

Nearby chains