3D structure

PDB id
4V89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V89_188 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.067
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4V89|1|BA|G|1666
4V89|1|BA|G|1667
4V89|1|BA|A|1668
4V89|1|BA|A|1669
4V89|1|BA|C|1670
4V89|1|BA|U|1671
4V89|1|BA|A|1672
4V89|1|BA|G|1673
4V89|1|BA|G|1674
*
4V89|1|BA|C|1990
4V89|1|BA|U|1991
4V89|1|BA|G|1992
4V89|1|BA|U|1993
4V89|1|BA|C|1994

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BD
50S ribosomal protein L3
Chain BO
50S ribosomal protein L14

Coloring options:


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