IL_4V8A_027
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_027 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.0843
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8A|1|AA|U|858
4V8A|1|AA|G|859
4V8A|1|AA|U|860
4V8A|1|AA|A|861
4V8A|1|AA|G|862
*
4V8A|1|AA|C|915
4V8A|1|AA|G|916
4V8A|1|AA|A|917
4V8A|1|AA|A|918
4V8A|1|AA|G|919
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L27
- Chain A3
- 50S ribosomal protein L30
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 50S ribosomal protein L16
Coloring options: