3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
4V8A|1|AA|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_036 not in the Motif Atlas
Homologous match to IL_7RQB_036
Geometric discrepancy: 0.0784
The information below is about IL_7RQB_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

4V8A|1|AA|C|998
4V8A|1|AA|U|999
4V8A|1|AA|A|1000
4V8A|1|AA|A|1001
4V8A|1|AA|G|1002
*
4V8A|1|AA|C|1153
4V8A|1|AA|G|1154
4V8A|1|AA|A|1155
4V8A|1|AA|A|1156
4V8A|1|AA|G|1157

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain A3
50S ribosomal protein L30
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AU
50S ribosomal protein L20
Chain AV
50S ribosomal protein L21

Coloring options:


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