IL_4V8A_060

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V8A|1|AA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_060 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0892

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8A|1|AA|G|1526
4V8A|1|AA|G|1527
4V8A|1|AA|A|1528
4V8A|1|AA|A|1528|||A
4V8A|1|AA|G|1529
*
4V8A|1|AA|U|1540
4V8A|1|AA|G|1541
4V8A|1|AA|A|1542
4V8A|1|AA|C|1543
4V8A|1|AA|A|1544
4V8A|1|AA|A|1545
4V8A|1|AA|C|1546

Current chains

Chain AA

23S ribosomal RNA

Nearby chains