IL_4V8A_097

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAA,UUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_097 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1533

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8A|1|AA|G|2588
4V8A|1|AA|A|2589
4V8A|1|AA|A|2590
*
4V8A|1|AA|U|2604
4V8A|1|AA|U|2605
4V8A|1|AA|C|2606

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2