IL_4V8A_106

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_106 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.084

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8A|1|AA|U|2847
4V8A|1|AA|G|2848
4V8A|1|AA|U|2849
4V8A|1|AA|A|2850
4V8A|1|AA|A|2851
4V8A|1|AA|G|2852
*
4V8A|1|AA|U|2865
4V8A|1|AA|U|2866
4V8A|1|AA|G|2867
4V8A|1|AA|A|2868
4V8A|1|AA|G|2869

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19

Chain DA

Small subunit ribosomal RNA; SSU rRNA