IL_4V8A_111
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_111 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1038
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8A|1|AB|U|34
4V8A|1|AB|U|35
4V8A|1|AB|C|36
4V8A|1|AB|C|37
4V8A|1|AB|C|38
*
4V8A|1|AB|G|44
4V8A|1|AB|A|45
4V8A|1|AB|A|46
4V8A|1|AB|C|47
4V8A|1|AB|A|48
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A4
- 50S ribosomal protein L31
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AS
- 50S ribosomal protein L18
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