Motif IL_58103.6 Version IL_58103.6 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-3 | 1-8 | 4-8 | 5-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_358 | 5J7L | 0.2550 | 2 | Symmetric double minor groove platform | DB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 2 | IL_4V9F_104 | 4V9F | 0.1060 | 2 | Symmetric double minor groove platform | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 3 | IL_5NS3_002 | 5NS3 | 0.0000 | 2 | Symmetric double minor groove platform | C | double-stranded RNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 4 | IL_7RQB_114 | 7RQB | 0.1276 | 2 | Symmetric double minor groove platform | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW |
| 5 | IL_8C3A_147 | 8C3A | 0.1761 | 2 | 3 | 5S rRNA | U | 32 | C | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW | |
| 6 | IL_5TBW_376 | 5TBW | 0.1634 | 2 | Symmetric double minor groove platform | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
| 7 | IL_4WF9_115 | 4WF9 | 0.2112 | 2 | Symmetric double minor groove platform | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | C | 45 | A | 46 | cWW | ncWS | cWW | ntSW | |
| 8 | IL_6CZR_158 | 6CZR | 0.4935 | 1 | Minor groove platform | 1a | SSU rRNA | C | 1128 | A | 1129 | C | 1130 | U | 1131 | C | 1132 | * | G | 1107 | U | 1108 | G | 1110 | ncSH | cWW | ntHS | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 2 |
| UUCCC*GAACA | 2 |
| UACCC*GAACA | 1 |
| UCCCC*GAUCA | 1 |
| UUCCC*GAUCA | 1 |
| CACUC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*AAC | 2 |
| UCC*AAC | 2 |
| ACC*AAC | 1 |
| CCC*AUC | 1 |
| UCC*AUC | 1 |
| ACU*UU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Symmetric double minor groove platform (6)
- Minor groove platform (1)
- (1)
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.59
Coloring options: