RNA 3D Hub //

Motif IL_58103.6 Version IL_58103.6 of this group appears in releases 3.80 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5break 6 7 81-31-84-85-66-7
1 IL_5J7L_3585J7L0.25502Symmetric double minor groove platformDB 5S rRNAA34C35C36C37C38*G44C47U48ncSHcWWcWScWWtSW
2 IL_4V9F_1044V9F0.10602Symmetric double minor groove platform9 5S rRNAU33A34C35C36C37*G43C46A47cSHcWWcWScWWtSW
3 IL_5NS3_0025NS30.00002Symmetric double minor groove platformCdouble-stranded RNAA34C35C36C37C38*G44C47U48ncSHcWWcWScWWtSW
4 IL_7RQB_1147RQB0.12762Symmetric double minor groove platform1B 5S rRNAU34U35C36C37C38*G44C47A48ncSHcWWcWScWWtSW
5 IL_8C3A_1478C3A0.176123 5S rRNAU32C33C34C35C36*G41C44A45ncSHcWWcWScWWtSW
6 IL_5TBW_3765TBW0.16342Symmetric double minor groove platformAS 5S rRNAU32U33C34C35C36*G41C44A45ncSHcWWcWScWWtSW
7 IL_4WF9_1154WF90.21122Symmetric double minor groove platformY 5S rRNAU32U33C34C35C36*G42C45A46cWWncWScWWntSW
8 IL_6CZR_1586CZR0.49351Minor groove platform1a SSU rRNAC1128A1129C1130U1131C1132*G1107U1108G1110ncSHcWWntHScWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
ACCCC*GAACU2
UUCCC*GAACA2
UACCC*GAACA1
UCCCC*GAUCA1
UUCCC*GAUCA1
CACUC*GUUG1
Non-Watson-Crick part of the motif
SequenceCounts
CCC*AAC2
UCC*AAC2
ACC*AAC1
CCC*AUC1
UCC*AUC1
ACU*UU1

Release history

Release3.803.813.823.833.843.853.86
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Symmetric double minor groove platform (6)
  • Minor groove platform (1)
  • (1)
    • Basepair signature
    cWW-cWS-L-tSW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.24 | Max 0.59
    Help

    Coloring options:

    IL_5J7L_358:IL_5J7L_358 = 0IL_5J7L_358:IL_4V9F_104 = 0.2282IL_5J7L_358:IL_5NS3_002 = 0.255IL_5J7L_358:IL_7RQB_114 = 0.2697IL_5J7L_358:IL_8C3A_147 = 0.303IL_5J7L_358:IL_5TBW_376 = 0.3142IL_5J7L_358:IL_4WF9_115 = 0.3598IL_5J7L_358:IL_6CZR_158 = 0.5945IL_4V9F_104:IL_5J7L_358 = 0.2282IL_4V9F_104:IL_4V9F_104 = 0IL_4V9F_104:IL_5NS3_002 = 0.106IL_4V9F_104:IL_7RQB_114 = 0.1075IL_4V9F_104:IL_8C3A_147 = 0.1698IL_4V9F_104:IL_5TBW_376 = 0.1682IL_4V9F_104:IL_4WF9_115 = 0.2116IL_4V9F_104:IL_6CZR_158 = 0.4873IL_5NS3_002:IL_5J7L_358 = 0.255IL_5NS3_002:IL_4V9F_104 = 0.106IL_5NS3_002:IL_5NS3_002 = 0IL_5NS3_002:IL_7RQB_114 = 0.1276IL_5NS3_002:IL_8C3A_147 = 0.1761IL_5NS3_002:IL_5TBW_376 = 0.1634IL_5NS3_002:IL_4WF9_115 = 0.2112IL_5NS3_002:IL_6CZR_158 = 0.4935IL_7RQB_114:IL_5J7L_358 = 0.2697IL_7RQB_114:IL_4V9F_104 = 0.1075IL_7RQB_114:IL_5NS3_002 = 0.1276IL_7RQB_114:IL_7RQB_114 = 0IL_7RQB_114:IL_8C3A_147 = 0.1609IL_7RQB_114:IL_5TBW_376 = 0.1626IL_7RQB_114:IL_4WF9_115 = 0.2178IL_7RQB_114:IL_6CZR_158 = 0.4786IL_8C3A_147:IL_5J7L_358 = 0.303IL_8C3A_147:IL_4V9F_104 = 0.1698IL_8C3A_147:IL_5NS3_002 = 0.1761IL_8C3A_147:IL_7RQB_114 = 0.1609IL_8C3A_147:IL_8C3A_147 = 0IL_8C3A_147:IL_5TBW_376 = 0.0896IL_8C3A_147:IL_4WF9_115 = 0.2688IL_8C3A_147:IL_6CZR_158 = 0.497IL_5TBW_376:IL_5J7L_358 = 0.3142IL_5TBW_376:IL_4V9F_104 = 0.1682IL_5TBW_376:IL_5NS3_002 = 0.1634IL_5TBW_376:IL_7RQB_114 = 0.1626IL_5TBW_376:IL_8C3A_147 = 0.0896IL_5TBW_376:IL_5TBW_376 = 0IL_5TBW_376:IL_4WF9_115 = 0.23IL_5TBW_376:IL_6CZR_158 = 0.4694IL_4WF9_115:IL_5J7L_358 = 0.3598IL_4WF9_115:IL_4V9F_104 = 0.2116IL_4WF9_115:IL_5NS3_002 = 0.2112IL_4WF9_115:IL_7RQB_114 = 0.2178IL_4WF9_115:IL_8C3A_147 = 0.2688IL_4WF9_115:IL_5TBW_376 = 0.23IL_4WF9_115:IL_4WF9_115 = 0IL_4WF9_115:IL_6CZR_158 = 0.5083IL_6CZR_158:IL_5J7L_358 = 0.5945IL_6CZR_158:IL_4V9F_104 = 0.4873IL_6CZR_158:IL_5NS3_002 = 0.4935IL_6CZR_158:IL_7RQB_114 = 0.4786IL_6CZR_158:IL_8C3A_147 = 0.497IL_6CZR_158:IL_5TBW_376 = 0.4694IL_6CZR_158:IL_4WF9_115 = 0.5083IL_6CZR_158:IL_6CZR_158 = 0IL_5J7L_358IL_4V9F_104IL_5NS3_002IL_7RQB_114IL_8C3A_147IL_5TBW_376IL_4WF9_115IL_6CZR_158Discrepancy0.000.100.200.300.400.50
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