IL_4V8A_123

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V8A|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_123 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.0867

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8A|1|BA|C|280
4V8A|1|BA|G|281
4V8A|1|BA|A|282
4V8A|1|BA|A|283
4V8A|1|BA|U|284
*
4V8A|1|BA|A|357
4V8A|1|BA|U|358
4V8A|1|BA|A|359
4V8A|1|BA|G|360

Current chains

Chain BA

23S ribosomal RNA

Nearby chains