IL_4V8A_126
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 4V8A|1|BA|U|504, 4V8A|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_126 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0491
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V8A|1|BA|G|481
4V8A|1|BA|A|482
4V8A|1|BA|A|483
4V8A|1|BA|C|484
*
4V8A|1|BA|G|496
4V8A|1|BA|A|497
4V8A|1|BA|G|498
4V8A|1|BA|U|499
4V8A|1|BA|G|500
4V8A|1|BA|A|501
4V8A|1|BA|A|502
4V8A|1|BA|A|503
4V8A|1|BA|U|504
4V8A|1|BA|A|505
4V8A|1|BA|G|506
4V8A|1|BA|A|507
4V8A|1|BA|G|508
4V8A|1|BA|C|509
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BW
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein L24
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