IL_4V8A_162

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_162 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.0984

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V8A|1|BA|U|1357
4V8A|1|BA|G|1358
4V8A|1|BA|A|1359
4V8A|1|BA|A|1360
4V8A|1|BA|G|1361
*
4V8A|1|BA|C|1370
4V8A|1|BA|G|1371
4V8A|1|BA|U|1372
4V8A|1|BA|A|1373
4V8A|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2