IL_4V8A_183

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_183 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0648

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V8A|1|BA|U|1851
4V8A|1|BA|C|1852
4V8A|1|BA|A|1853
4V8A|1|BA|A|1854
4V8A|1|BA|G|1855
*
4V8A|1|BA|C|1887
4V8A|1|BA|G|1888
4V8A|1|BA|A|1889
4V8A|1|BA|A|1890
4V8A|1|BA|G|1891

Current chains

Chain BA

23S ribosomal RNA

Nearby chains