Motif IL_90318.1 Version IL_90318.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7RQB_074 | 7RQB | 0.0000 | 0 | UAA/GAN with extra pair | 1A | LSU rRNA | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | * | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | cWW | tSH | tHS | cWW |
| 2 | IL_7A0S_069 | 7A0S | 0.2093 | 0 | UAA/GAN with extra pair | X | LSU rRNA | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | cWW | ntSH | cWW | |
| 3 | IL_4WF9_073 | 4WF9 | 0.2474 | 0 | UAA/GAN with extra pair | X | LSU rRNA | U | 1878 | U | 1879 | A | 1880 | A | 1881 | G | 1882 | * | C | 1914 | G | 1915 | A | 1916 | A | 1917 | G | 1918 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*UCAAG | 1 |
| UCAAG*UGAAG | 1 |
| UUAAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*CAA | 1 |
| CAA*GAA | 1 |
| UAA*GAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN with extra pair (3)
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Heat map statistics
- Min 0.21 | Avg 0.15 | Max 0.25
Coloring options: