IL_4V8A_243

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_243 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0973

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V8A|1|CA|G|450
4V8A|1|CA|A|451
4V8A|1|CA|A|452
4V8A|1|CA|A|453
4V8A|1|CA|C|454
4V8A|1|CA|C|455
*
4V8A|1|CA|G|476
4V8A|1|CA|A|477
4V8A|1|CA|C|479
4V8A|1|CA|U|480
4V8A|1|CA|G|481
4V8A|1|CA|A|482
4V8A|1|CA|C|483

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16