3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
4V8A|1|CA|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_260 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.1471
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4V8A|1|CA|G|933
4V8A|1|CA|C|934
4V8A|1|CA|A|935
*
4V8A|1|CA|U|1380
4V8A|1|CA|U|1381
4V8A|1|CA|C|1382
4V8A|1|CA|C|1383
4V8A|1|CA|C|1384

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CG
30S ribosomal protein S7
Chain CI
30S ribosomal protein S9

Coloring options:


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