IL_4V8A_262

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_262 not in the Motif Atlas

Homologous match to IL_6CZR_151

Geometric discrepancy: 0.2339

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8A|1|CA|G|993
4V8A|1|CA|A|994
4V8A|1|CA|C|995
4V8A|1|CA|A|996
4V8A|1|CA|U|997
*
4V8A|1|CA|A|1044
4V8A|1|CA|C|1045

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S ribosomal protein S14